PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG440900.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 282aa    MW: 29965.6 Da    PI: 5.6079
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG440900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-12117162454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h e+Er+RR+++N +f  Lr  +P+       +++Ka+ L  A  YI +L
  Pavir.2NG440900.2.p 117 SHVEAERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 162
                          89************************6.....49**************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.021113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-15115179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.22E-12116167No hitNo description
PfamPF000101.4E-9116162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15117176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-10119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDDLLSPCSS FSPPSPPSFF SHAGHPIIEF TSCEVPEQWL LGDVVVAKNE AGYDDGDDLW  60
SSLSPDSDLS VQPPPPSQPA PPPQQEQEPS ATVPAAQPPG KRRGRKPGPR PEGPTVSHVE  120
AERQRREKLN RRFCDLRAAV PTVSRMDKAS LLADAAAYIA ELRARVARLE AESRRAAAAR  180
WEPVAASCGP PRAPGHGGEA VEVRMLGPDA ASVRATSAAP HAAARLMGAL RSLELHVQHA  240
CVTRVHGLTV QDVVVDVPAQ LQDDDGLRAA LVQVLQEQDS G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957382.11e-125PREDICTED: transcription factor MYC2-like
TrEMBLK3ZZ681e-125K3ZZ68_SETIT; Uncharacterized protein
STRINGSi031900m1e-124(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-16bHLH family protein